Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
Hamis, Sara; Somervuo, Panu; Ågren, J. Arvid; Tadele, Dagim Shiferaw; Kesseli, Juha; Scott, Jacob G.; Nykter, Matti; Gerlee, Philip; Finkelshtein, Dmitri; Ovaskainen, Otso (2023)
Hamis, Sara
Somervuo, Panu
Ågren, J. Arvid
Tadele, Dagim Shiferaw
Kesseli, Juha
Scott, Jacob G.
Nykter, Matti
Gerlee, Philip
Finkelshtein, Dmitri
Ovaskainen, Otso
2023
68
Julkaisun pysyvä osoite on
https://urn.fi/URN:NBN:fi:tuni-202305035042
https://urn.fi/URN:NBN:fi:tuni-202305035042
Kuvaus
Peer reviewed
Tiivistelmä
Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics generated by a specific family of IBMs, namely spatio-temporal point processes (STPPs). SCMs are spatially resolved population models formulated by a system of differential equations that approximate the dynamics of two STPP-generated summary statistics: first-order spatial cumulants (densities), and second-order spatial cumulants (spatial covariances). We exemplify how SCMs can be used in mathematical oncology by modelling theoretical cancer cell populations comprising interacting growth factor-producing and non-producing cells. To formulate model equations, we use computational tools that enable the generation of STPPs, SCMs and mean-field population models (MFPMs) from user-defined model descriptions (Cornell et al. Nat Commun 10:4716, 2019). To calculate and compare STPP, SCM and MFPM-generated summary statistics, we develop an application-agnostic computational pipeline. Our results demonstrate that SCMs can capture STPP-generated population density dynamics, even when MFPMs fail to do so. From both MFPM and SCM equations, we derive treatment-induced death rates required to achieve non-growing cell populations. When testing these treatment strategies in STPP-generated cell populations, our results demonstrate that SCM-informed strategies outperform MFPM-informed strategies in terms of inhibiting population growths. We thus demonstrate that SCMs provide a new framework in which to study cell-cell interactions, and can be used to describe and perturb STPP-generated cell population dynamics. We, therefore, argue that SCMs can be used to increase IBMs’ applicability in cancer research.
Kokoelmat
- TUNICRIS-julkaisut [19236]